Cancer-miRNA Regulatory Network

Compendium of miRNA Target Genes

Download FIRM

Citation

Rna Processing (GO:0006396) Genes Targeted by hsa-mir-190 in AD Lung Bhattacharjee Cluster 60 Table contains all genes in the AD Lung Bhattacharjee cluster number 60. If a gene harbors a predicted miRNA binding site by one of the three inference methods it is displayed in the final column: M = Weeder-miRvestigator predicted site, P = PITA predicted site and T = TargetScan predicted site. Entrez ID Symbol Description hsa-mir-190 GO:0006396 114908 TMEM123 transmembrane protein 123 [Source:HGNC Symbol;Acc:30138] zzz999 10657 KHDRBS1 KH domain containing, RNA binding, signal transduction associated 1 [Source:HGNC Symbol;Acc:18116] zzz999 Yes 1315 COPB1 coatomer protein complex, subunit beta 1 [Source:HGNC Symbol;Acc:2231] zzz999 8763 CD164 CD164 molecule, sialomucin [Source:HGNC Symbol;Acc:1632] zzz999 10923 SUB1 SUB1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19985] zzz999 64844 MARCH7 membrane-associated ring finger (C3HC4) 7 [Source:HGNC Symbol;Acc:17393] zzz999 7514 XPO1 exportin 1 (CRM1 homolog, yeast) [Source:HGNC Symbol;Acc:12825] zzz999 9559 VPS26A vacuolar protein sorting 26 homolog A (S. pombe) [Source:HGNC Symbol;Acc:12711] zzz999 23196 FAM120A family with sequence similarity 120A [Source:HGNC Symbol;Acc:13247] zzz999 8446 DUSP11 dual specificity phosphatase 11 (RNA/RNP complex 1-interacting) [Source:HGNC Symbol;Acc:3066] zzz999 Yes 10236 HNRNPR heterogeneous nuclear ribonucleoprotein R [Source:HGNC Symbol;Acc:5047] zzz999 Yes 10755 GIPC1 GIPC PDZ domain containing family, member 1 [Source:HGNC Symbol;Acc:1226] zzz999 4190 MDH1 malate dehydrogenase 1, NAD (soluble) [Source:HGNC Symbol;Acc:6970] zzz999 9295 SRSF11 serine/arginine-rich splicing factor 11 [Source:HGNC Symbol;Acc:10782] zzz999 Yes 7307 U2AF1 U2 small nuclear RNA auxiliary factor 1 [Source:HGNC Symbol;Acc:12453] zzz999 Yes 6427 SRSF2 serine/arginine-rich splicing factor 2 [Source:HGNC Symbol;Acc:10783] zzz999 Yes 55233 MOBKL1B MOB1, Mps One Binder kinase activator-like 1B (yeast) [Source:HGNC Symbol;Acc:16015] zzz999 829 CAPZA1 capping protein (actin filament) muscle Z-line, alpha 1 [Source:HGNC Symbol;Acc:1488] zzz999 3181 HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033] P Yes 25814 ATXN10 ataxin 10 [Source:HGNC Symbol;Acc:10549] zzz999 7050 TGIF1 TGFB-induced factor homeobox 1 [Source:HGNC Symbol;Acc:11776] zzz999 23478 SEC11A SEC11 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:17718] zzz999 6392 SDHD succinate dehydrogenase complex, subunit D, integral membrane protein [Source:HGNC Symbol;Acc:10683] zzz999 7319 UBE2A ubiquitin-conjugating enzyme E2A (RAD6 homolog) [Source:HGNC Symbol;Acc:12472] zzz999 3192 HNRNPU heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) [Source:HGNC Symbol;Acc:5048] zzz999 Yes 9556 C14orf2 chromosome 14 open reading frame 2 [Source:HGNC Symbol;Acc:1188] zzz999 5511 PPP1R8 protein phosphatase 1, regulatory (inhibitor) subunit 8 [Source:HGNC Symbol;Acc:9296] zzz999 Yes 50999 TMED5 transmembrane emp24 protein transport domain containing 5 [Source:HGNC Symbol;Acc:24251] zzz999 9403 zzz999 zzz999 zzz999 9168 TMSB10 thymosin beta 10 [Source:HGNC Symbol;Acc:11879] zzz999 10558 SPTLC1 serine palmitoyltransferase, long chain base subunit 1 [Source:HGNC Symbol;Acc:11277] zzz999 3312 HSPA8 heat shock 70kDa protein 8 [Source:HGNC Symbol;Acc:5241] zzz999 1660 DHX9 DEAH (Asp-Glu-Ala-His) box polypeptide 9 [Source:HGNC Symbol;Acc:2750] zzz999 Yes 23020 SNRNP200 small nuclear ribonucleoprotein 200kDa (U5) [Source:HGNC Symbol;Acc:30859] zzz999 Yes 3190 HNRNPK heterogeneous nuclear ribonucleoprotein K [Source:HGNC Symbol;Acc:5044] zzz999 Yes 548645 DNAJC25 DnaJ (Hsp40) homolog, subfamily C , member 25 [Source:HGNC Symbol;Acc:34187] zzz999 55573 CDV3 CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928] zzz999 9375 TM9SF2 transmembrane 9 superfamily member 2 [Source:HGNC Symbol;Acc:11865] zzz999 5716 PSMD10 proteasome (prosome, macropain) 26S subunit, non-ATPase, 10 [Source:HGNC Symbol;Acc:9555] zzz999 10016 PDCD6 programmed cell death 6 [Source:HGNC Symbol;Acc:8765] zzz999 10730 YME1L1 YME1-like 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:12843] zzz999 474383 F8A3 coagulation factor VIII-associated 3 [Source:HGNC Symbol;Acc:31850] zzz999 9643 MORF4L2 mortality factor 4 like 2 [Source:HGNC Symbol;Acc:16849] zzz999 10484 SEC23A Sec23 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:10701] P T 9538 EI24 etoposide induced 2.4 mRNA [Source:HGNC Symbol;Acc:13276] zzz999 8428 STK24 serine/threonine kinase 24 [Source:HGNC Symbol;Acc:11403] P T 4717 NDUFC1 NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa [Source:HGNC Symbol;Acc:7705] zzz999 23118 TAB2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 [Source:HGNC Symbol;Acc:17075] zzz999 9868 TOMM70A translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:11985] zzz999 378 ARF4 ADP-ribosylation factor 4 [Source:HGNC Symbol;Acc:655] P 7341 SUMO1 SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae) [Source:HGNC Symbol;Acc:12502] zzz999 1854 DUT deoxyuridine triphosphatase [Source:HGNC Symbol;Acc:3078] zzz999 10092 ARPC5 actin related protein 2/3 complex, subunit 5, 16kDa [Source:HGNC Symbol;Acc:708] P T 2274 FHL2 four and a half LIM domains 2 [Source:HGNC Symbol;Acc:3703] zzz999 9874 TLK1 tousled-like kinase 1 [Source:HGNC Symbol;Acc:11841] zzz999 8301 PICALM phosphatidylinositol binding clathrin assembly protein [Source:HGNC Symbol;Acc:15514] zzz999 10438 C1D C1D nuclear receptor corepressor [Source:HGNC Symbol;Acc:29911] zzz999 Yes 6434 TRA2B transformer 2 beta homolog (Drosophila) [Source:HGNC Symbol;Acc:10781] P Yes 292 SLC25A5 solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 5 [Source:HGNC Symbol;Acc:10991] P 6235 RPS29 ribosomal protein S29 [Source:HGNC Symbol;Acc:10419] zzz999 3091 HIF1A hypoxia inducible factor 1, alpha subunit (basic helix-loop-helix transcription factor) [Source:HGNC Symbol;Acc:4910] zzz999 3146 HMGB1 high mobility group box 1 [Source:HGNC Symbol;Acc:4983] zzz999

Need help? Please contact cplaisier(at)systemsbiology.org if you have any questions, comments or concerns. Developed at the Institute for Systems Biology in the Baliga Lab.